Automated identification of mouse visual areas with intrinsic signal imaging

Code for intrinsic signal optical imaging acquisition, stimulus presentation, and mouse visual area segmentation.

View the Project on GitHub SNLC/ISI

ISI

Code for ISI image acquisition, stimulus presentation, and mouse visual area segmentation.

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Imager & Stimulator Programs

Imager.zip contains files for image acquisition, written by Dario Ringach and Ian Nauhaus. Stimulator.zip contains files for running a visual stimulus during data acquisition.

For complete documentation on installing and using this code, see https://sites.google.com/site/iannauhaus/home/matlab-code

Visual Area Segmentation

At the command line, use "getAreaBorders." Add the other files to your path for complete usage.

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For more information, see Juavinett, Nauhaus, Garrett, & Callaway (2016) Automated identification of mouse visual areas with intrinsic signal imaging. Nature Protocols.